BD Rhapsody Onco-BC 乳癌靶向檢測試劑盒（panel）

英文名稱：BD Rhapsody  Onco-BC Targeted Panel

中文名稱：BD Rhapsody Onco-BC 乳癌靶向檢測試劑盒（panel）

用途：與BD Rhapsody單細(xì)胞表達(dá)分析儀配合使用，檢測與乳腺癌和免疫細(xì)胞相關(guān)的 400 個基因

乳腺癌生物學(xué)因復(fù)雜的基因表達(dá)，細(xì)胞異質(zhì)性和患者間的差異而變得復(fù)雜。為了解決這一復(fù)雜性，BD Rhapsody OncoBC靶向檢測panel使用BD Rhapsody單細(xì)胞分析系統(tǒng)為單細(xì)胞乳腺癌研究提供了一種簡化的檢測方法。 通過集中分析與乳腺癌生物學(xué)zui相關(guān)的基因和標(biāo)志物，減少測序通量，并且降低了與整個轉(zhuǎn)錄組測序相關(guān)時間和測序成本。

BD Rhapsody  Onco-BC Targeted Panel特點(diǎn)

經(jīng)驗證的基因panel專注于人類乳腺癌生物學(xué)

有針對性的方法提高了實驗效率

可重復(fù)的檢測方法可用于各種實驗

歡迎您咨詢?nèi)A雅再生醫(yī)學(xué)旗艦公司：紅榮微再（上海）生物工程技術(shù)有限公司  ：1500 1904 520。紅榮微再-客服:  經(jīng)銷商專員

BD Rhapsody單細(xì)胞分析系統(tǒng)

BD Rhapsody單細(xì)胞分析系統(tǒng)是一種新型的單細(xì)胞mRNA表達(dá)分析儀器。它能捕獲并分離細(xì)胞，通過磁珠對細(xì)胞和mRNA轉(zhuǎn)錄本進(jìn)行分類擴(kuò)增以供測序。作為單細(xì)胞RNA-seq的新方法，與傳統(tǒng)的全轉(zhuǎn)錄組擴(kuò)增（WTA）相比，BD Rhapsody單細(xì)胞分析系統(tǒng)可以同時處理12個樣本，能夠?qū)Τ汕先f個單細(xì)胞的數(shù)百個表達(dá)基因進(jìn)行數(shù)字定量，極大程度節(jié)省實驗時間和降低測序成本。

BD Rhapsody單細(xì)胞分析系統(tǒng)可以定制靶向組合（panel），靶向方法有助于提高單細(xì)胞測序效率，并推動對當(dāng)今一些zui具挑戰(zhàn)性的科學(xué)領(lǐng)域的進(jìn)一步探索。BD經(jīng)驗證的檢測試劑盒（panel）顯示穩(wěn)定且可重現(xiàn)的細(xì)胞異質(zhì)性陣列，可用于探索與眾多應(yīng)用相關(guān)的細(xì)胞類型。BD Rhapsody 系統(tǒng)包括以下檢測試劑盒（panel）：

□ BD Rhapsody Onco-BC 靶向檢測試劑盒（panel） 與乳腺癌和免疫細(xì)胞相關(guān)的 400 個基因

□ BD Rhapsody 免疫反應(yīng)檢測試劑盒（panel） 免疫細(xì)胞類型譜分析

□ BD Rhapsody T-細(xì)胞靶向檢測試劑盒（panel）

□ BD Rhapsody 補(bǔ)充檢測試劑盒（panel）

□ BD Rhapsody 自定義檢測試劑盒（panel）

BD Rhapsody Onco-BC 靶向檢測試劑盒（panel）

Panel designed by scientists, for scientists

The customizable and validated BD Rhapsody Onco-BC Targeted Panel was created from collaborations with clinical oncologists.

The panel content combines data from experimental and database sources, chosen to include genes with known involvement in cancer progression, proliferation, epithelial-tomesenchymal transition (EMT) and cancer stem cells. Including PAM50 genes aids molecular subtyping of breast cancer cells1,while immunophenotyping and stromal cell markers enable comprehensive surveys of the complex tumor microenvironment.

科學(xué)家為科學(xué)家設(shè)計的Panel

可定制且經(jīng)過驗證的BD Rhapsody Onco-BC乳腺癌靶向Panel是由臨床腫瘤學(xué)家合作開發(fā)的。

BD Rhapsody Onco-BC乳腺癌靶向Panel結(jié)合了來自實驗和數(shù)據(jù)庫來源的數(shù)據(jù)，選擇的數(shù)據(jù)包括已知參與癌癥progression，擴(kuò)增，上皮 - 間質(zhì)轉(zhuǎn)化（EMT）和癌癥干細(xì)胞的基因。 包括PAM50基因有助于乳腺癌細(xì)胞的分子亞型1，而免疫分型和基質(zhì)細(xì)胞標(biāo)志物可以對復(fù)雜的腫瘤微環(huán)境進(jìn)行全面調(diào)查。

Tailored libraries for targeted sequencing

The BD Rhapsody Onco-BC Targeted Panel is designed for the BD Rhapsody system, and uses multiplex PCR for detecting up to 389 genes. After cells are lysed in the BD Rhapsody Cartridge,

beads hybridized with mRNA are magnetically retrieved for cDNA synthesis. Primers included in the BD Rhapsody Onco-BC Targeted Panel and BD Rhapsody Supplemental Panel are used for several rounds of gene-specific, nested PCR for library construction. Final PCR products for sequencing contain adapters, a cell label, a unique molecular index (UMI), and up to 400 bp of the 3 end of a target gene. Assay products may be sequenced on Illumina MiniSeq, MiSeq, NextSeq, HiSeq2500 and HiSeq4000 sequencers.

靶向測序的定制文庫

BD Rhapsody Onco-BC乳癌靶向Panel專為BD Rhapsody系統(tǒng)設(shè)計，使用多重PCR檢測多達(dá)389個基因。細(xì)胞在BD Rhapsody Cartridge中裂解后，與mRNA雜交的磁珠被磁性回收用于cDNA合成。包含在BD Rhapsody Onco-BC靶向Panel和BD Rhapsody Supplemental Panel 中的引物用于多輪基因特異性巢式PCR，用于構(gòu)建文庫。用于測序的zui終PCR產(chǎn)物含有接頭，細(xì)胞標(biāo)記（label），獨(dú)特的分子索引（unique molecular index，UMI）和3 末端高達(dá)400bp的靶基因。檢測產(chǎn)物可以在Illumina MiniSeq，MiSeq，NextSeq，HiSeq2500和HiSeq4000測序儀上進(jìn)行測序。

Figure 1. cDNA synthesis and library construction chemistry with the BD Rhapsody Onco-BC Targeted Panel.

圖1.BD Rhapsody Onco-BC Targeted Panel的cDNA合成和文庫構(gòu)建原理

Your target genes, delivered your way

Researchers may select up to 100 additional genes for analysis,with the BD Rhapsody Supplemental Panel. Using BD s primer design software, primers for supplemental gene targets are designed to be compatible with pre-designed base panels.

Supplemental primers are shipped to you and combined with the BD Rhapsody Onco-BC Targeted Panel for library preparation.

專屬目標(biāo)基因定制

研究人員可以經(jīng)由BD Rhapsody Supplemental Panel選擇zui多100個額外基因分析。使用BD的引物設(shè)計軟件，補(bǔ)充目標(biāo)基因的引物可以與預(yù)設(shè)基礎(chǔ)panel兼容。

Remarkable panel performance single-cell suspensions from a metastatic breast cancer sample

In the following example, cryopreserved single-cell suspensions from a disaggregated metastatic breast cancer patient sample were sorted using the BD FACSAria system to enrich for live cells. 4,409 cells derived from a lymph node metastasis were profiled using the BD Rhapsody system. Fifteen cell types were detected, including four subpopulations of breast cancer cells and a diverse tumor microenvironment of stromal and major immune cell types. Because the analysis focused on just five percent of the transcriptome, the amount of sequencing is drastically lowered.

卓越的panel性能 轉(zhuǎn)移性乳腺癌樣本的單細(xì)胞懸液

在下面的實例中，使用BD FACSAria TM系統(tǒng)分選來自disaggregated轉(zhuǎn)移性乳腺癌患者樣品的凍存單細(xì)胞懸浮液以富集活細(xì)胞。使用BD Rhapsody系統(tǒng)對來源于淋巴結(jié)轉(zhuǎn)移的4,409個細(xì)胞進(jìn)行分析。檢測到15種細(xì)胞類型，包括4種乳腺癌細(xì)胞亞群和多種腫瘤微環(huán)境（間質(zhì)細(xì)胞和主要免疫細(xì)胞組成）。由于分析只集中在轉(zhuǎn)錄組的5％，因此測序通量極大降低。

Table 1: Example genes by category

Pathway # of genes in panel

Cell adhesion 23；Cell cycle 44；Chemokine/chemokine receptor,cytokine/cytokine receptor 53；

Signal transduction 56；Oncogenes, tumor suppressors 10；Tumor immunity, immune checkpoint,

immune cell activation 24；Surface antigen 32；Other* 147（ Angiogenesis; cell death; complement system; structural; transport; DNA repair;epithelial-to-mesenchymal transition; hormone receptor; immunoglobulin; lncRNA;metabolism; multi-drug resistance; protease; transcription factor）

表1 參考基因

通路

Panel基因

細(xì)胞粘連

23

細(xì)胞周期

44

趨化因子/趨化因子受體，

細(xì)胞因子/細(xì)胞因子受體

53

信號轉(zhuǎn)導(dǎo)

56

癌基因，腫瘤抑制劑

10

腫瘤免疫，免疫檢查點(diǎn)

24

表面抗原

32

其他

147

其他：血管生成; 細(xì)胞死亡; 補(bǔ)充體系;結(jié)構(gòu); 運(yùn)輸; DNA修復(fù);上皮間質(zhì)轉(zhuǎn)化; 激素受體;免疫球蛋白;lncRNA;代謝; 多重耐藥性;蛋白酶; 轉(zhuǎn)錄因子

表2：BD Rhapsody Onco-BC Targeted Panel metrics

建議單細(xì)胞reads

細(xì)胞類型鑒別：2K

樣本間的直接比較：20K

Panel基因數(shù)：389

BD Rhapsody Onco-BC乳癌靶向檢測panel應(yīng)用實例

轉(zhuǎn)移性乳腺癌樣本分析

Analysis of a metastatic breast cancer sample

Figure 2. Example data from analysis of a lymph node containing metastatic BrCa cells using the BD Rhapsody Onco-BC Targeted Panel. (a) tSNE projection of 4,409 cells annotated by cell type and (b) box plots of marker gene expression for each major cell type show complex tumor heterogeneity.

圖2.使用BD Rhapsody Onco-BC靶向Panel分析含有轉(zhuǎn)移性BrCa細(xì)胞淋巴結(jié)的實例數(shù)據(jù)。 （a）細(xì)胞類型注釋的4,409個細(xì)胞的tSNE projection和（b）每種主要細(xì)胞類型的標(biāo)志基因box plots顯示復(fù)雜的腫瘤異質(zhì)性。

Learn more about the power of targeted single-cell analysis

The BD Rhapsody Onco-BC Targeted Panel brings single-cell analysis within reach of all breast cancer researchers, by combining increased sequencing efficiency with a flexible approach to your projects. Contact us to find out how the BD Rhapsody panel can help you further the understanding of breast cancer biology.

了解更多單細(xì)胞靶向分析功能

BD Rhapsody Onco-BC Targeted Panel通過將更高的測序效率與靈活的方法結(jié)合到您的項目中，使所有乳腺癌研究人員都能夠進(jìn)行單細(xì)胞分析。，了解BD Rhapsodypanel如何幫助您進(jìn)一步了解乳腺癌生物學(xué)。

參考文獻(xiàn)

1. Parker JS, Mullins M, Cheang MCU, et al. Supervised Risk Predictor of Breast Cancer Based on Intrinsic Subtypes. Journal of Clinical Oncology. 2009;27(8):1160-1167.

歡迎您咨詢?nèi)A雅再生醫(yī)學(xué)旗艦公司：紅榮微再（上海）生物工程技術(shù)有限公司  ：1500 1904 520。紅榮微再-客服:  經(jīng)銷商專員